What did I last do?...How to get your command line log

  • Posted on: 6 February 2017
  • By: nblouin

Are you one of those people who prefers interactive jobs over batch submissions?
Or perhaps you work out alot of your workflow kinks on the command line?

...and then 6 months later you have no idea how to repeat what you did?

There is an easy way to capture all of your session on MtMoran for future reference. You can even send the output to a place where you can search them in the future (like MyLogFiles for example).

Microbiomics symposium, March 16-17, 2017. Santa Fe, NM

  • Posted on: 17 November 2016
  • By: nblouin

New Mexico BioInformatics, Science & Technology Symposium (NMBIST)

March 16-17, 2017

The New Mexico BioInformatics, Science & Technology (NMBIST) Symposium in Santa Fe, New Mexico is a two-day event which is supported by NIGMS's New Mexico IDeA Network of Biomedical Research Excellence (NM-INBRE) and the National Center for Genome Resources (NCGR). This educational event brings world class speakers to the southwest region, impacting approximately 150 interested undergrads and university faculty primarily from New Mexico (and beyond!).

 

BLAST databases are now incorporated into MtMoran

  • Posted on: 10 October 2016
  • By: nblouin

ARCC has installed the NCBI databases listed below to be used once the BLAST module is loaded. The names in the list below are the correct spelling needed when comparing your query sequences against a particular NCBI database. If you are unfamiliar with any of the databases listed and want to know how the may be useful for your work, you will find an explanation of each of the databases here at the BLASTdb documents page.

RNAseq: Biological replicates vs sequencing depth

  • Posted on: 9 September 2016
  • By: vikram

If you are gearing up to do a RNAseq experiment and wondering if you should sequence deeper or sequence more biological replicates, this article - which I find still relevant - would be very useful.

RNA-seq differential expression studies: more sequence, or more replication?
Liu, Zhou and White 2013
http://bioinformatics.oxfordjournals.org/content/early/2013/12/06/bioinf...

Advanced Python Workshop - Feb 6-10, 2017 - Suffolk, England

  • Posted on: 1 September 2016
  • By: vikram

http://prstatistics.com/course/advanced-python-for-biologists-apyb/

This course is being delivered by Dr Martin Jones, an expert in Python
and author of two text books,

Python for Biologists [http://www.amazon.com/Python-Biologists-complete-programming-beginners/d...

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